Triple Helix, Fall 2018

Table of Contents: Science Agenda: The Politics of Grant Writing / by Kavya Rajesh (p. 4) -- From the Experts / by Katherine Bruner (p. 5) -- 3D Printed Drugs: The Future of Pharmaceuticals / by Ethan Wang (p. 6) -- Computerized Markets: Wall Street Takeover / by James Kiraly (p. 10) -- The Evolution of Fear / by Alisha Ahmed (p. 14) -- ADDing Up / by Victor Liaw (p. 18) -- The Clone Wars / by Jina Zhou (p. 22) -- Physician-Assisted Suicide: Drawing the Line / by Haley Wolf (p. 26) -- Supervised Injection Sites / by Alex Gajewski (p. 30) -- On Emerging Medicalization and Health Care / by Patrick Lee (p. 33) -- The Future of Human Gene Modifications / by Elizabeth Robinson (p. 36)College of Natural SciencesUT LibrariesLiberal Art

Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH

Visualization of the transcriptome and the nuclear organization in situ has been challenging for single-cell analysis. Here, we demonstrate a multiplexed single-molecule in situ method, intron seqFISH, that allows imaging of 10,421 genes at their nascent transcription active sites in single cells, followed by mRNA and lncRNA seqFISH and immunofluorescence. This nascent transcriptome-profiling method can identify different cell types and states with mouse embryonic stem cells and fibroblasts. The nascent sites of RNA synthesis tend to be localized on the surfaces of chromosome territories, and their organization in individual cells is highly variable. Surprisingly, the global nascent transcription oscillated asynchronously in individual cells with a period of 2 hr in mouse embryonic stem cells, as well as in fibroblasts. Together, spatial genomics of the nascent transcriptome by intron seqFISH reveals nuclear organizational principles and fast dynamics in single cells that are otherwise obscured

Dynamics and Spatial Genomics of the Nascent Transcriptome by Intron seqFISH

Visualization of the transcriptome and the nuclear organization in situ has been challenging for single-cell analysis. Here, we demonstrate a multiplexed single-molecule in situ method, intron seqFISH, that allows imaging of 10,421 genes at their nascent transcription active sites in single cells, followed by mRNA and lncRNA seqFISH and immunofluorescence. This nascent transcriptome-profiling method can identify different cell types and states with mouse embryonic stem cells and fibroblasts. The nascent sites of RNA synthesis tend to be localized on the surfaces of chromosome territories, and their organization in individual cells is highly variable. Surprisingly, the global nascent transcription oscillated asynchronously in individual cells with a period of 2 hr in mouse embryonic stem cells, as well as in fibroblasts. Together, spatial genomics of the nascent transcriptome by intron seqFISH reveals nuclear organizational principles and fast dynamics in single cells that are otherwise obscured

Bioinformatics in China: A Personal Perspective

Biochemical Research MethodsMathematical & Computational BiologySCI(E)PubMed3EDITORIAL MATERIAL4e1000020

Measurement of W+W− production in association with one jet in proton–proton collisions at sqrt(s) = 8TeV with the ATLAS detector

The production of W boson pairs in association with one jet in pp collisions at View the MathML sources=8 TeV is studied using data corresponding to an integrated luminosity of 20.3 fb−1 collected by the ATLAS detector during 2012 at the CERN Large Hadron Collider. The cross section is measured in a fiducial phase-space region defined by the presence of exactly one electron and one muon, missing transverse momentum and exactly one jet with a transverse momentum above 25 GeV and a pseudorapidity of |η|<4.5|η|<4.5. The leptons are required to have opposite electric charge and to pass transverse momentum and pseudorapidity requirements. The fiducial cross section is found to be View the MathML sourceσWWfid,1-jet=136±6(stat)±14(syst)±3(lumi) fb. In combination with a previous measurement restricted to leptonic final states with no associated jets, the fiducial cross section of WW production with zero or one jet is measured to be View the MathML sourceσWWfid,≤1-jet=511±9(stat)±26(syst)±10(lumi) fb. The ratio of fiducial cross sections in final states with one and zero jets is determined to be 0.36±0.050.36±0.05. Finally, a total cross section extrapolated from the fiducial measurement of WW production with zero or one associated jet is reported. The measurements are compared to theoretical predictions and found in good agreement

Heat Scanning for the Fabrication of Conductive Fibers

Conductive fibers are essential building blocks for implementing various functionalities in a textile platform that is highly conformable to mechanical deformation. In this study, two major techniques were developed to fabricate silver-deposited conductive fibers. First, a droplet-coating method was adopted to coat a nylon fiber with silver nanoparticles (AgNPs) and silver nanowires (AgNWs). While conventional dip coating uses a large ink pool and thus wastes coating materials, droplet-coating uses minimal quantities of silver ink by translating a small ink droplet along the nylon fiber. Secondly, the silver-deposited fiber was annealed by similarly translating a tubular heater along the fiber to induce sintering of the AgNPs and AgNWs. This heat-scanning motion avoids excessive heating and subsequent thermal damage to the nylon fiber. The effects of heat-scanning time and heater power on the fiber conductance were systematically investigated. A conductive fiber with a resistance as low as ~2.8 Ω/cm (0.25 Ω/sq) can be produced. Finally, it was demonstrated that the conductive fibers can be applied in force sensors and flexible interconnectors

Triple Helix, Fall 2019

Table of Contents: From the Expert / by Nathaniel Woodward (p. 2) -- Lab-Cultured Meat / by Victor Liaw (p. 4) -- Tooth Regenerative Therapy / by Omkar Patel (p. 6) -- Voluntourism / by Sofia Ferguson (p. 8) -- The Art [or Science] of Pedagogy / by Alisha Ahmed (p. 10) -- Reminiscing in Real Time / by Rahul Pentaparthy (p. 12) -- Sexual Assault's Attack on the Mind / by Emmilyne Thomas (p. 14) -- Population Control / by Amy Pham (p. 16) -- Free Will / by Aaron Luna (p. 18) -- The Development and Ethics of AI / by Ethan Wang (p. 20) -- Direct to Consumer Testing / by Jina Zhou (p. 22) -- Is That a Disease? / by Montavius Coleman (p. 23)College of Natural SciencesLiberal ArtsUT Librarie